GgaEX6034437 @ galGal3
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
NA
Coordinates
chr4:39940492-39946358:-
Coord C1 exon
chr4:39946260-39946358
Coord A exon
chr4:39942749-39943005
Coord C2 exon
chr4:39940492-39940572
Length
257 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTTTTGTTTTTCAGGGG
3' ss Score
10.61
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCACGCTGGTACACAGCTGTAATTTTGACAGCGGCCTGTGTGGATGGATCAAGGACAAGGATGATGGTTTGCACTGGGAGCCAGTTAGAGACGTGTCAG
Seq A exon
GGGGACGATATCTCACCATCTCTGAACCCAAAGGCACAGAGGGAAAAGCAGCACATCTTATTCTGCCGCTGGGCCACGTGGCTCAGGCTGGGGACTTGTGCCTGTCATTCAGACATAAGGTGCCTGGGCTGCATTCGGGCGCCCTCCAAGTCTTTGTGAGGAGAAGTGGTGCTCATGGACCAGCTGTGTGGGGAAGGAACGGTGGCCACGGCTGGAGGCAGACACACATAACTCTGCGAGGACTGGGCATCAAGAGT
Seq C2 exon
GTTATTTTCAAAGGAGAAAAAGGGGAAGGAAGAACTGGAGACATTGGACTGGATGATGTGATGTTGAGAAGAGGACGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(19.3=79.4)
A:
PF0062918=MAM=FE(60.7=100)
C2:
PF0062918=MAM=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACAGCTGTAATTTTGACAGCG
R:
GCAGCGTCCTCTTCTCAACAT
Band lengths:
172-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]