RnoEX0060718 @ rn6
Exon Skipping
Gene
ENSRNOG00000052873 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr2:238002990-238009742:-
Coord C1 exon
chr2:238009644-238009742
Coord A exon
chr2:238004405-238004661
Coord C2 exon
chr2:238002990-238003073
Length
257 bp
Sequences
Splice sites
3' ss Seq
GGCTTCCTTTCCCGTTCCAGGTG
3' ss Score
11.58
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCATTCTCATACACAGCTGTAATTTTGACCATGGACTTTGTGGATGGATCAGAGAAAAGGATAGCGACTTGCACTGGGAGCCAACCAGGGACCCAGCAG
Seq A exon
GTGGACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAGGCTGCCCGCTTGGTGTTACCTCTCGGCCACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCGCCCTGCAGGTGTTTGTGAGAAAACATGGTACCCACGGATCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGC
Seq C2 exon
GTCATCTTCAAAGGTGAAAAAAGGCGTGGTCACACGGGGGAGATTGGATTGGATGATGTGAGCTTGAAAAGAGGTCGCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052873-'27-27,'27-25,29-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.151 C2=0.148
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(19.3=79.4)
A:
PF0062918=MAM=FE(60.7=100)
C2:
PF0062918=MAM=PD(18.6=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCTCATACACAGCTGTAAT
R:
GCAGCGACCTCTTTTCAAGCT
Band lengths:
180-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]