DreEX6033521 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51981592-51982878:+
Coord C1 exon
chr1:51981592-51981721
Coord A exon
chr1:51981925-51982045
Coord C2 exon
chr1:51982816-51982878
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTGGTGTTTATAGGTC
3' ss Score
9.26
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGAGAATCGTTTCCGCTCTCCTCTGGCGTGGGACATGGTGGGCAAGAATCTGTTCGCTATGGCCATCGAGGGCGTGATTTTCTTCAGCATCACCGTCCTCATCCAGTACCGCTTCTGCATTAAGGCCAG
Seq A exon
GTCACTTAGCACTAAGCTGAAGCCAATCGGAGAGGAGGATGAGGACGTAGCCCGAGAGAGGCAAAGGATTCTGGGAGGAGGAGGACAGACTGATATCCTGGAGCTCAGGCAGCTCACCAAG
Seq C2 exon
GTGTATAAGAGGAAGCAGAAGCCAGCTGTAGACAGACTGTGTGTGGGAATCCCACCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.2=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGTTTCCGCTCTCCTCTG
R:
GGGATTCCCACACACAGTCTG
Band lengths:
178-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]