BtaEX0001712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45177978-45178449:+
Coord C1 exon
chr7:45177978-45178107
Coord A exon
chr7:45178179-45178299
Coord C2 exon
chr7:45178387-45178449
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACTCATATCTCTGTCCTTAGACC
3' ss Score
9.39
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAGAGGGGTATTTCCAGTCGCCCCTGCGTTGGGAGGTGGTCGGCAAGAACCTCTTGGCCATGTTCATACAGGGGCCAATCTTCCTCCTCTTTACATTACTGCTTCAGCACCACAACCGCCTCCTACCACA
Seq A exon
ACCCAAGCTGAGGCCGTTACCCGCCCTGGGAGAGGAGGATGAGGATGTGGCCCGTGAGCGGGAACGGGTAGTACAAGGGGCCACCCAGGGGGATGTGTTGGTACTGAGGGACCTGACCAAG
Seq C2 exon
GTGTACCCTGGGCAGAGGACACCAGCTGTTGACCGCCTGTGCCTGGGGATCCCCCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'39-45,'39-44,43-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.4=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGGTATTTCCAGTCGCC
R:
GGGATCCCCAGGCACAGG
Band lengths:
182-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development