DreEX6090514 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5699907-5702009:+
Coord C1 exon
chr11:5699907-5700036
Coord A exon
chr11:5700121-5700244
Coord C2 exon
chr11:5701947-5702009
Length
124 bp
Sequences
Splice sites
3' ss Seq
AATGAGTGCTTCCTCTTCAGTCG
3' ss Score
4.47
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GAACCAAACAGAATCTGGATCCTTTATCCTGGGATTTTGTTGGGAAGAACCTGTTTGCCATGGCGATGGAAGGGATTGTGTTCTTCCTCTTTACTGTTCTCCTGCAGTATAAGTTCTTTGTTAATTTTAG
Seq A exon
TCGGTGGTCAGGTTTTGTTCTGCCCCCGCTGGGCATGGAGGACGAAGATGTGGCGAGAGAGAGGGAGCGTGTGAAGAACGGTAGAGCGCTTGGAGACATTCTCATCCTCTCAGACCTTAGCAAG
Seq C2 exon
GTATACAAAGCAGGTAGAAAGCCAGCAGTGAATCGGCTTTGCTTGGGCATTCCTCGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.8=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAAACAGAATCTGGATCCT
R:
TTCTCCTCGAGGAATGCCCAA
Band lengths:
193-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]