MmuEX6049691 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79474458-79474931:+
Coord C1 exon
chr10:79474458-79474587
Coord A exon
chr10:79474660-79474780
Coord C2 exon
chr10:79474869-79474931
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACTAACCTGTCTATCCTCAGATC
3' ss Score
10.45
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGACAAGCAATTTCAGTCACCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCTCCTCATCACACTCCTGCTCCAACACCGCAACCGTCTCCTGCCACA
Seq A exon
ATCAAAACCAAGACTGCTGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGTGACCAAGGGGGCTACCCAGGGGGATGTGCTAGTCCTCAGGGACTTGACCAAG
Seq C2 exon
GTTTACCGTGGGCAGAGGAACCCAGCTGTGGATCGCCTGTGCTTAGGGATCCCCCCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'41-47,'41-45,42-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.488 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.8=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATTTCAGTCACCCCTACG
R:
GGGGATCCCTAAGCACAGGC
Band lengths:
178-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: