GgaEX6027988 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824914-2825419:-
Coord C1 exon
chr28:2825290-2825419
Coord A exon
chr28:2825083-2825203
Coord C2 exon
chr28:2824914-2824976
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGCTGCTCCCCCAGACC
3' ss Score
7.3
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGACAAGCGCTTCGTGTCCCCGCTGTCCTGGGACTTAGCAGGGAAGAACATGTTTGCCATGGCCATCGAGGGCACCATCTTCTTCCTCTTCACCGTACTGCTGCAGTACCGCTTCTTCCTGCGGCTCCG
Seq A exon
ACCACGTGCTCTGCAGCTGCCCTCACTGGGGGATGAGGATGAGGACGTAGCCCGGGAGCGGGCGCGGGTGGGCAGCACCACACGGCGCAGTGCCGTCCTGCTGCTGAAGGACCTGACCAAG
Seq C2 exon
GTGTATCGGTACCGACGTGCTCCAGCAGTGGACCGGCTGTGCCTGGCTGTCCCACCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'44-48,'44-47,45-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.3=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAAGCGCTTCGTGTCC
R:
TGGGACAGCCAGGCACAG
Band lengths:
184-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]