RnoEX6030637 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12745652-12746118:-
Coord C1 exon
chr7:12745989-12746118
Coord A exon
chr7:12745796-12745916
Coord C2 exon
chr7:12745652-12745714
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACTCACCTGTCTATCCTCAGACC
3' ss Score
9.93
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGACAAGCAATTCCAGTCGCCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGGTGGCCCAGGGGCCCCTGTTCCTCCTAATCACACTCCTGCTCCAACATCGCAACCGCCTCCTGCCACA
Seq A exon
ACCAAAATCAAGACTGCCGCCGCCCCTGGGGGAGGAGGATGAGGATGTGGTTCGAGAGCGTGAGCGGGTGACCAAGGGAGCCACCCAGGGGGATGTGCTGGTCCTCAGGGACTTGACCAAG
Seq C2 exon
GTGTACCGTGGGCAGAGGAGCCCAGCAGTGGATCACCTGTGCTTGGGGATCCCCCCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'55-61,'55-59,56-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.549 C2=0.024
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAGCAATTCCAGTCGCC
R:
GATCCCCAAGCACAGGTGATC
Band lengths:
180-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]