GgaEX6027988 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2378813-2379318:-
Coord C1 exon
chr28:2379189-2379318
Coord A exon
chr28:2378982-2379102
Coord C2 exon
chr28:2378813-2378875
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGCTGCTCCCCCAGACC
3' ss Score
7.3
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGACAAGCGCTTCGTGTCCCCGCTGTCCTGGGACTTAGCAGGGAAGAACATGTTTGCCATGGCCATCGAGGGCACCATCTTCTTCCTCTTCACCGTACTGCTGCAGTACCGCTTCTTCCTGCGGCTCCG
Seq A exon
ACCACGTGCTCTGCAGCTGCCCTCACTGGGGGATGAGGATGAGGACGTAGCCCGGGAGCGGGCGCGGGTGGGCAGCACCACACGGCGCAGTGCCGTCCTGCTGCTGAAGGACCTGACCAAG
Seq C2 exon
GTGTATCGGTACCGACGTGCTCCAGCAGTGGACCGGCTGTGCCTGGCTGTCCCACCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.0=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAAGCGCTTCGTGTCC
R:
TGGGACAGCCAGGCACAG
Band lengths:
184-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]