GgaEX7004781 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54554114-54554686:-
Coord C1 exon
chrZ:54554557-54554686
Coord A exon
chrZ:54554311-54554431
Coord C2 exon
chrZ:54554114-54554176
Length
121 bp
Sequences
Splice sites
3' ss Seq
TACCATGTTGCTCTATACAGGCC
3' ss Score
8.28
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAGAATCGTTTTGTGTCCCCTCTGTCATGGGACCTGGTGGGAAGGAACCTGTTTGCCATGGCAGTGGAGGGTGTGGTCTTCTTCCTCATTACTGTGCTCATCCAGTACAGATTCTTCATCAAACCCAG
Seq A exon
GCCTGTCTATGCCAAGTTACCTCCTGTGAATGATGAAGATGAAGATGTAAACAGAGAAAGGCAGAGAATAATAAGCGGAGGAGGACAGAGTGACATACTAGAAATCAGGGAGCTGACCAAG
Seq C2 exon
ATTTATAGAATGAAACGAAAGCCAGCAGTTGACAGGATATGTGTTGGAATCCCTCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'59-77,'59-76,60-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.0=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAATCGTTTTGTGTCCCCT
R:
GGAGGGATTCCAACACATATCCTG
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]