DreEX6056954 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6195399-6195872:+
Coord C1 exon
chr14:6195399-6195528
Coord A exon
chr14:6195608-6195728
Coord C2 exon
chr14:6195810-6195872
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCTTTGGTCCTTTTCCTTAGGTC
3' ss Score
10.31
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTGAGAACCGTTTCCGTTCTCCACTGGAGTGGGACATGGTGGGTAAGAATCTTTTCGCTATGGCTGTGGAGGGTGTGGTTTTCTTCATTATCACCGTCCTCATCCAGTACAGATTCTTCTTTGAACCCAA
Seq A exon
GTCTTTATGTCCTAAATTGAGTCCGATTGGAGAGGAAGATGAAGATGTAGCCAGAGAGAGGCAGAGGATCATGAGTGGGGCCGGACAGGGAGACATTCTCGAACTCCGACAGCTCACTAAG
Seq C2 exon
GTGTACAAGCGGAAACAAAAGCCTGCAGTGGATCGTCTGTGTGTTGGCATTCCTCCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'45-51,'45-50,46-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.2=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTTTCCGTTCTCCACTG
R:
CTCCTGGAGGAATGCCAACAC
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]