MmuEX6093500 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53041539-53042793:-
Coord C1 exon
chr4:53042664-53042793
Coord A exon
chr4:53042314-53042434
Coord C2 exon
chr4:53041539-53041601
Length
121 bp
Sequences
Splice sites
3' ss Seq
TAAACACTCTTTCTCCCAAGACC
3' ss Score
5.87
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGAGAACCGCTTCGTCTCTCCGCTCTCTTGGGACTTGGTAGGACGGAACCTTTTTGCCATGGCCGTGGAAGGGGTGGTGTTCTTCCTCATTACTGTTCTGATCCAGTACAGATTTTTCATCAGGCCCAG
Seq A exon
ACCTGTAAAGGCGAAGCTTCCTCCTTTGAATGACGAGGATGAGGATGTGAGGCGGGAGAGACAGAGGATTCTGGACGGTGGCGGACAGAATGACATCCTAGAGATCAAGGAACTGACCAAG
Seq C2 exon
ATCTATAGGAGGAAGCGGAAGCCTGCAGTCGACAGGATCTGCATCGGCATCCCTCCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'58-63,'58-62,59-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.268 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCGCTTCGTCTCTCC
R:
CGGGAGGGATGCCGATGC
Band lengths:
187-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types