RnoEX0004747 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69868866-69870126:-
Coord C1 exon
chr5:69869997-69870126
Coord A exon
chr5:69869653-69869773
Coord C2 exon
chr5:69868866-69868928
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTACTGTTTCCAAGACC
3' ss Score
6.19
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGGAGAACCGCTTCGTCTCTCCACTCTCTTGGGACTTAGTAGGACGGAACGAAAATGCCATGGCCGTGGAAGGGGTGGTGTTCTTCCTCGTTACGGTTCTAATCCAGTACCGATTTTTCATCAGGCCCAG
Seq A exon
ACCTGTAAAGGCGAGGCTTCCTCCTTTGAATGACGAGGACGAGGACGTGAGGAGGGAGAGACAGAGGATTCTGGAGGGTGGAGGACAGAATGACATCCTAGAGATCAAAGAACTGACCAAG
Seq C2 exon
ATCTACAGAAGGAAGCGGAAGCCTGCAGTGGACAGAATCTGCGTTGGCATCCCTCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'55-54,'55-53,56-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCGCTTCGTCTCTCCA
R:
TCCAGGAGGGATGCCAACG
Band lengths:
188-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]