BtaEX6035701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96281960-96283326:-
Coord C1 exon
chr8:96283197-96283326
Coord A exon
chr8:96282811-96282931
Coord C2 exon
chr8:96281960-96282022
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTCTTCCTCCTAAGACC
3' ss Score
6.54
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGAGAACCGCTTTGTCTCACCACTGTCTTGGGACTTAGTGGGACGAAATCTCTTTGCCATGGCTGTGGAAGGAGTGGTGTTCTTCCTCATCACTGTGCTGATCCAGTACCGATTCTTCATCAGGCCCAG
Seq A exon
ACCTGTAAAGGCAAAGCTTCCTCCTCTGAATGATGAGGATGAAGATGTGAAGAGGGAAAGACAGAGAATTCTTGATGGTGGAGGACAGAATGACATCTTGGAAATCAAGGAGTTGACTAAG
Seq C2 exon
GTATACAGAAGAAAGAGGAAACCTGCTGTTGACAGGATCTGCGTTGGCATTCCTCCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'50-52,'50-50,51-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCTTTGTCTCACCACTG
R:
CTCACCAGGAGGAATGCCAAC
Band lengths:
188-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]