DreEX6035434 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12721688-12725952:-
Coord C1 exon
chr9:12725846-12725952
Coord A exon
chr9:12721846-12722286
Coord C2 exon
chr9:12721688-12721721
Length
441 bp
Sequences
Splice sites
3' ss Seq
CATAACTCTTTTCTTCCCAGAAA
3' ss Score
8.4
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTTCCTGAAGGAAGCTTTGGAGCAGAGGCTGGAGAAGGAAAGAGAGGAGGTGCGCAAAGCGGCTGGTATGGTGATCCGGGCCCACATACTAAGTTATGTGGCAAG
Seq A exon
AAAACACTATAAAAGAGTTCAGAGCAGCACCGTCACAATCCAAAAGAACTACCGCGCTTACTTCTGGAGACAAGCATTTCTTCGTTTCCGCTCAGCCGCCGTGGTCCTCCAGAAGCACCTGCGTGGGCAGATCGCTCGTCAGCTCTACCGGCAGCTTCTGGAGGAGAAACAGAGGAGAGAAGAGGAGGAGAGGATCAGAAGAGAAGAAGAGGAGAGGAGACGCCAGGAGGAGCTGAGGAGACTCCAGGAGGAGAAACAAAGACAAGAGGAAGAAAGGAGGAAAGAGGAGGAGAGACTGAGGCTTCTAGAAGAGGAGAAGAAGAGAAGAGAGGAGGAACAGGAGACTTTGCGGCTCCAGCAGGAGGAGGAAGAGCTGAAGAGGAGGCAAGAGGAGCTCAAGAGCAAGCAGATATTGGAGGACAGAGAGGCAGGGCACAGCAG
Seq C2 exon
GAGCCTAGTGGGGAAAAACCATCACAACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.277 C2=1.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3)
A:
PF102434=MIP-T3=PU(37.2=81.1),PF0061222=IQ=WD(100=14.2)
C2:
PF102434=MIP-T3=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 2 annotated functions for this event
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001883; ELM sequence: LYCVVIIQKNYRAFLLRRRF; Overlap: FULL
PMID: 20731332
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: comigration in gel electrophoresis, competition binding. ELM ID: ELMI001884; ELM sequence: KKAAIVFQKQLRGQIARRVY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]