DreEX6037445 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36675269-36690802:+
Coord C1 exon
chr9:36675269-36675433
Coord A exon
chr9:36677887-36678131
Coord C2 exon
chr9:36690671-36690802
Length
245 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGTCTTTCCCTTCAGCTC
3' ss Score
11.54
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATTCTTTTCTGGACTGACTGGGATGCCACTTTTCCTCGGATCGAGGCGACGTCCATGAGTGGAAGTGGAAGACATGTTGTGTACAAGGACATGGAGATCGGAGCATGGCCTAATGGTCTCACCCTGGACCATCAGGAGAGGAGAATAGTGTGGACAGATGCTCG
Seq A exon
CTCAGATGCGATATATTCAGCCCTGTATGATGGCAGCGGGGTCATCGAGATCCTCAGGGGCCATGAGTACCTGTCGCACCCATTCGCTGTGTCTCTGTTTGGAGGTGGCGTGTACTGGACAGACTGGAGGACCAACACTTTAGCCAGAGCGAATAAATGGACAGGCCACAATGTCACTGTGATCCAAAAGACAAGCGCACAGCCGTTTGATCTAGAGATTTACCATCCTAGCCGACAACCTCAAG
Seq C2 exon
CTTCAAACCCATGCGAAGGAAACGATGGAAGAGGTCCTTGTTCCCATCTTTGTCTCATTGATTACAACCGCACAGCATCCTGCTCGTGTCCTCATCTCATGAAGCTCTCGCTCAACAACCGCTCTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'24-26,'24-23,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.159
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=80.4)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGGACTGACTGGGATGC
R:
CCACACAAGAGCGGTTGTTGA
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]