GgaEX1033881 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33621075-33628726:-
Coord C1 exon
chr7:33628562-33628726
Coord A exon
chr7:33627860-33628104
Coord C2 exon
chr7:33621075-33621206
Length
245 bp
Sequences
Splice sites
3' ss Seq
AGTTTGGATTTATCTTGTAGATC
3' ss Score
6.2
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AATTCTATTTTGGACAGACTGGGATGCAAATTTTCCTCGCATTGAATCTGCTTCTATGAGCGGAGCAGAAAGAAAGATCATATATAAAGATATGGATACTGGAGCCTGGCCTAATGGCCTTACAGTGGATCACTTTGAAAAAAGAATAGTATGGACAGATGCCAG
Seq A exon
ATCAGATGCTATTTATTCTGCATTATATGATGGAACCGGCATGATAGAGATTATACGGGGTCATGAATATCTTTCTCACCCCTTTGCTGTTTCTTTGTATGGGAGCGAAGTATATTGGACAGATTGGCGGACCAATACACTTGCAAAAGCCAATAAATGGACCGGCCAGAATGTCAGCGTTATACAAAAAACAAGTGCTCAGCCCTTTGATCTTCAGATCTATCACCCAAGTCGTCAGCCACAAG
Seq C2 exon
CTTCAAATCCATGCGCTGCTAATGAGGGCAGAGGTCCGTGTTCTCACATGTGTCTGATCAGTCACAACAGAAGTGCTGCATGTGCATGTCCACATCTGATGAAACTTTCTTTAGACAAGAAAACATGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'39-51,'39-46,41-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.148
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=80.4)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGGACAGACTGGGATGCA
R:
TGTCTAAAGAAAGTTTCATCAGATGT
Band lengths:
276-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]