GgaEX1033881 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31505256-31512899:-
Coord C1 exon
chr7:31512735-31512899
Coord A exon
chr7:31512033-31512277
Coord C2 exon
chr7:31505256-31505387
Length
245 bp
Sequences
Splice sites
3' ss Seq
AGTTTGGATTTATCTTGTAGATC
3' ss Score
6.2
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AATTCTATTTTGGACAGACTGGGATGCAAATTTTCCTCGCATTGAATCTGCTTCTATGAGCGGAGCAGAAAGAAAGATCATATATAAAGATATGGATACTGGAGCCTGGCCTAATGGCCTTACAGTGGATCACTTTGAAAAAAGAATAGTATGGACAGATGCCAG
Seq A exon
ATCAGATGCTATTTATTCTGCATTATATGATGGAACCGGCATGATAGAGATTATACGGGGTCATGAATATCTTTCTCACCCCTTTGCTGTTTCTTTGTATGGGAGCGAAGTATATTGGACAGATTGGCGGACCAATACACTTGCAAAAGCCAATAAATGGACCGGCCAGAATGTCAGCGTTATACAAAAAACAAGTGCTCAGCCCTTTGATCTTCAGATCTATCACCCAAGTCGTCAGCCACAAG
Seq C2 exon
CTTCAAATCCATGCGCTGCTAATGAGGGCAGAGGTCCGTGTTCTCACATGTGTCTGATCAGTCACAACAGAAGTGCTGCATGTGCATGTCCACATCTGATGAAACTTTCTTTAGACAAGAAAACATGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'38-60,'38-58,39-60
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.156
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=80.4)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGGACAGACTGGGATGCA
R:
TGTCTAAAGAAAGTTTCATCAGATGT
Band lengths:
276-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]