RnoEX6016702 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25923754-25934125:-
Coord C1 exon
chr3:25933961-25934125
Coord A exon
chr3:25933464-25933708
Coord C2 exon
chr3:25923754-25923885
Length
245 bp
Sequences
Splice sites
3' ss Seq
ATGTACCAACATTTCTCTAGGTC
3' ss Score
7.66
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AATTCTTTTCTGGACAGACTGGGATGCCAATTTCCCTCGCATTGAATCTGCCTCCATGAGTGGTGCTGGAAGAAAAACCATCTATAAAGATATGAAAACTGGGGCATGGCCTAATGGACTGACCGTGGACCACTTTGAAAGAAGAATAGTCTGGACAGATGCCAG
Seq A exon
GTCAGATGCTATTTATTCAGCCTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACATGAATACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCCAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATTCAGAAGACCAGCGCACAGCCATTTGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
Seq C2 exon
CTCCCAATCCTTGTGCAGCCAATGAAGGGAGAGGCCCCTGCTCTCACCTGTGTCTCATCAATCATAACAGGAGCGCAGCCTGTGCCTGCCCCCACCTAATGAAGCTCTCCTCCGACAAGAAAACCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'24-28,'24-26,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.156
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=80.4)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTTCTGGACAGACTGGGA
R:
AGCAGGTTTTCTTGTCGGAGG
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]