DreEX6037446 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36668398-36678131:+
Coord C1 exon
chr9:36668398-36668602
Coord A exon
chr9:36675269-36675433
Coord C2 exon
chr9:36677887-36678131
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTACATATAGCAT
3' ss Score
7.61
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
GTGTGACCGGGGTCGAGGTCGTGATTCAGCATGGTTTGGCCACCCCGGAGGGACTCGCAGTGGATTGGATTGCAGGAAACCTCTACTGGATAGACAGCAACTTGGATCAAATTGAGGTGGCCAAGCTGAATGGGGAAATGAGAACCACTTTGATTGCCGGTGGCATGGAGCACCCGCGAGCGCTGGCTGTAGACCCGGGACAGGG
Seq A exon
CATTCTTTTCTGGACTGACTGGGATGCCACTTTTCCTCGGATCGAGGCGACGTCCATGAGTGGAAGTGGAAGACATGTTGTGTACAAGGACATGGAGATCGGAGCATGGCCTAATGGTCTCACCCTGGACCATCAGGAGAGGAGAATAGTGTGGACAGATGCTCG
Seq C2 exon
CTCAGATGCGATATATTCAGCCCTGTATGATGGCAGCGGGGTCATCGAGATCCTCAGGGGCCATGAGTACCTGTCGCACCCATTCGCTGTGTCTCTGTTTGGAGGTGGCGTGTACTGGACAGACTGGAGGACCAACACTTTAGCCAGAGCGAATAAATGGACAGGCCACAATGTCACTGTGATCCAAAAGACAAGCGCACAGCCGTTTGATCTAGAGATTTACCATCCTAGCCGACAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGATTGGATTGCAGGA
R:
GCCACCTCCAAACAGAGACAC
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]