GgaEX6043156 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33627860-33629383:-
Coord C1 exon
chr7:33629179-33629383
Coord A exon
chr7:33628562-33628726
Coord C2 exon
chr7:33627860-33628104
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTTCCTCTCACTAGAAT
3' ss Score
9.19
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTAAGTGCTATTGAGGTGATAGTACAACATGGCCTGGCCACACCTGAAGGTCTTACTGTAGACTGGATTGCGGGAAACATATACTGGATAGACAGCAATCTGGACCAAATAGAAGTTGCAAAGCTAGATGGTACTCTGAGAACAACGTTAATAGCAGGAGCTATGGAACATCCAAGAGCTATTGCTTTGGATCCCAGATATGG
Seq A exon
AATTCTATTTTGGACAGACTGGGATGCAAATTTTCCTCGCATTGAATCTGCTTCTATGAGCGGAGCAGAAAGAAAGATCATATATAAAGATATGGATACTGGAGCCTGGCCTAATGGCCTTACAGTGGATCACTTTGAAAAAAGAATAGTATGGACAGATGCCAG
Seq C2 exon
ATCAGATGCTATTTATTCTGCATTATATGATGGAACCGGCATGATAGAGATTATACGGGGTCATGAATATCTTTCTCACCCCTTTGCTGTTTCTTTGTATGGGAGCGAAGTATATTGGACAGATTGGCGGACCAATACACTTGCAAAAGCCAATAAATGGACCGGCCAGAATGTCAGCGTTATACAAAAAACAAGTGCTCAGCCCTTTGATCTTCAGATCTATCACCCAAGTCGTCAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'38-46,'38-45,39-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTAGACTGGATTGCGGGA
R:
CGCTCCCATACAAAGAAACAGC
Band lengths:
256-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]