RnoEX6016701 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25933464-25940783:-
Coord C1 exon
chr3:25940579-25940783
Coord A exon
chr3:25933961-25934125
Coord C2 exon
chr3:25933464-25933708
Length
165 bp
Sequences
Splice sites
3' ss Seq
CATTATTTCTCTTTCTTCAGAAT
3' ss Score
9.64
5' ss Seq
CAGGTTAAA
5' ss Score
2.54
Exon sequences
Seq C1 exon
GTGTCAGTGCCATAGAAGTGGTTGTGGAACATGGCTTGGCAACCCCAGAAGGCCTGACAGTTGACTGGATAGCAGGCAACATATATTGGATAGACAGCAATCTGGACCAAATTGAAGTGTCTAAACTTGATGGTTCTCTGAGGGCTACACTAATAGCAGGAGCCATGGAGCATCCCAGGGCCATAGCACTGGATCCACGATATGG
Seq A exon
AATTCTTTTCTGGACAGACTGGGATGCCAATTTCCCTCGCATTGAATCTGCCTCCATGAGTGGTGCTGGAAGAAAAACCATCTATAAAGATATGAAAACTGGGGCATGGCCTAATGGACTGACCGTGGACCACTTTGAAAGAAGAATAGTCTGGACAGATGCCAG
Seq C2 exon
GTCAGATGCTATTTATTCAGCCTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACATGAATACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCCAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATTCAGAAGACCAGCGCACAGCCATTTGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'22-26,'22-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAGGAGCCATGGAGCAT
R:
CTGTGCGCTGGTCTTCTGAAT
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]