GgaEX6043156 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31512033-31513556:-
Coord C1 exon
chr7:31513352-31513556
Coord A exon
chr7:31512735-31512899
Coord C2 exon
chr7:31512033-31512277
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTTCCTCTCACTAGAAT
3' ss Score
9.19
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTAAGTGCTATTGAGGTGATAGTACAACATGGCCTGGCCACACCTGAAGGTCTTACTGTAGACTGGATTGCGGGAAACATATACTGGATAGACAGCAATCTGGACCAAATAGAAGTTGCAAAGCTAGATGGTACTCTGAGAACAACGTTAATAGCAGGAGCTATGGAACATCCAAGAGCTATTGCTTTGGATCCCAGATATGG
Seq A exon
AATTCTATTTTGGACAGACTGGGATGCAAATTTTCCTCGCATTGAATCTGCTTCTATGAGCGGAGCAGAAAGAAAGATCATATATAAAGATATGGATACTGGAGCCTGGCCTAATGGCCTTACAGTGGATCACTTTGAAAAAAGAATAGTATGGACAGATGCCAG
Seq C2 exon
ATCAGATGCTATTTATTCTGCATTATATGATGGAACCGGCATGATAGAGATTATACGGGGTCATGAATATCTTTCTCACCCCTTTGCTGTTTCTTTGTATGGGAGCGAAGTATATTGGACAGATTGGCGGACCAATACACTTGCAAAAGCCAATAAATGGACCGGCCAGAATGTCAGCGTTATACAAAAAACAAGTGCTCAGCCCTTTGATCTTCAGATCTATCACCCAAGTCGTCAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'37-58,'37-56,38-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTAGACTGGATTGCGGGA
R:
CGCTCCCATACAAAGAAACAGC
Band lengths:
256-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]