MmuEX6101033 @ mm9
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41150985-41158529:-
Coord C1 exon
chr2:41158325-41158529
Coord A exon
chr2:41151516-41151680
Coord C2 exon
chr2:41150985-41151229
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCATTATTTCCCTTTTTCAGAAT
3' ss Score
10.83
5' ss Seq
CAGGTTAAA
5' ss Score
2.54
Exon sequences
Seq C1 exon
GTGTCAGTGCCATAGAAGTGGTTGTGGAACATGGCTTGGCAACCCCAGAAGGCCTGACGGTTGACTGGATAGCTGGCAACATTTATTGGATAGATAGCAATCTGGACCAAATTGAAGTGTCTAAACTTGATGGTTCCCTGAGGGCTACACTAATAGCAGGAGCCATGGAGCATCCCAGGGCCATAGCACTGGATCCAAGATATGG
Seq A exon
AATTCTTTTCTGGACAGACTGGGATGCCAATTTCCCTCGCATTGAATCTGCTTCAATGAGTGGTGCCGGAAGAAAAACCATCTATAAAGACATGAAAACTGGGGCATGGCCTAATGGACTGACCGTGGACCACTTTGAAAGAAGAATAGTTTGGACGGATGCCAG
Seq C2 exon
GTCAGATGCTATTTATTCAGCTTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACACGAGTACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCTAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATCCAGAAGACGAGTGCACAACCATTCGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTTCCCTGAGGGCTACA
R:
CCCTGTCCACTTGTTGGCTTT
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: