MmuEX6101033 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41295465-41303009:-
Coord C1 exon
chr2:41302805-41303009
Coord A exon
chr2:41295996-41296160
Coord C2 exon
chr2:41295465-41295709
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCATTATTTCCCTTTTTCAGAAT
3' ss Score
10.83
5' ss Seq
CAGGTTAAA
5' ss Score
2.54
Exon sequences
Seq C1 exon
GTGTCAGTGCCATAGAAGTGGTTGTGGAACATGGCTTGGCAACCCCAGAAGGCCTGACGGTTGACTGGATAGCTGGCAACATTTATTGGATAGATAGCAATCTGGACCAAATTGAAGTGTCTAAACTTGATGGTTCCCTGAGGGCTACACTAATAGCAGGAGCCATGGAGCATCCCAGGGCCATAGCACTGGATCCAAGATATGG
Seq A exon
AATTCTTTTCTGGACAGACTGGGATGCCAATTTCCCTCGCATTGAATCTGCTTCAATGAGTGGTGCCGGAAGAAAAACCATCTATAAAGACATGAAAACTGGGGCATGGCCTAATGGACTGACCGTGGACCACTTTGAAAGAAGAATAGTTTGGACGGATGCCAG
Seq C2 exon
GTCAGATGCTATTTATTCAGCTTTCTATGATGGAACAAACATGATAGAAATTATCCGAGGACACGAGTACCTGTCACATCCCTTTGCTGTGTCTTTGTATGGGAGTGAGGTGTACTGGACTGATTGGAGGACCAACACACTGGCTAAAGCCAACAAGTGGACAGGGCAGAATGTCAGTGTGATCCAGAAGACGAGTGCACAACCATTCGACCTTCAGATTTACCATCCCAGTAGACAGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'45-41,'45-40,47-41=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTTTCTTCCTTCCTTCCT
R:
AGCCCGTGTAATGGTTTGTGT
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types