DreEX6038407 @ danRer10
Exon Skipping
Gene
ENSDARG00000016939 | itgb2
Description
integrin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-110411-4]
Coordinates
chr9:45174306-45177316:-
Coord C1 exon
chr9:45177259-45177316
Coord A exon
chr9:45175514-45175605
Coord C2 exon
chr9:45174306-45174498
Length
92 bp
Sequences
Splice sites
3' ss Seq
CGTTCGAACTATTCTTGAAGTCT
3' ss Score
2.32
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGATGCATCAGTCAGTGTGTCTGAAGAGTTTGCTGCTGTTGCTGGTGGGAACACAGG
Seq A exon
TCTACACACAGGAGCAATGCTTAAAAGCTTCAGTAAACACATGTGGAGACTGCATCAAGTCTGGACCTGGCTGTGCATGGTGTAAAGAGTTG
Seq C2 exon
AATTTCACCAAGACTGGAGAGCAGGAAGCAGCACGTTGTGACACTGTCAAGTTGCTTTTAGACAGAGGATGTAGCAAAGAGAACATCATAAATCCTCAAAACATTTTTCAAAATGTTGTGAACAAAGCTCTGGTTGCTGGTAAAGACCCAGTGCAAATCCAACCCCAAGAAATACAACTCAATCTTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016939-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF0036213=Integrin_beta=PU(4.1=54.8)
C2:
PF0036213=Integrin_beta=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGCTGCTGTTGCTGG
R:
ACCAGCAACCAGAGCTTTGTT
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]