DreEX6039253 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5578173-5580709:+
Coord C1 exon
chr16:5578173-5578529
Coord A exon
chr16:5578743-5578826
Coord C2 exon
chr16:5580605-5580709
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTATAATTTTCTCTTACAGAAA
3' ss Score
9.68
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGATGCGTGTGGACGCAGAGAAGCAGCGGCCGGTGTTTGACGATATGGAGGGTGAGCTGGCCAAGGCCTCAGCGGTCAGCCAGCGGATGGTCCAGATCCACATGGAGCGGGACGCTGAGCTGGAGCACTACAGACAGATGCTGGGCAGCCTGCAGGATCGCTGGCGGGCCGTCTTCGCCCAGATGGACCTGCGGCAGCGGGAGCTCGAGCAGCTCGGCCGGCAGCTGGGCTACTACAGGGAAAGCTACGACTGGCTCATCCGCTGGATCGCAGATGCTAAACAGCGGCAGGAGAAGATCCAGGCTGTGCCTATTATAGACAGCAAGACCCTCAAAGAACAGCTGGCACAGGAGAAG
Seq A exon
AAACTTCTGGAAGAAATTGAGAAAAACAAAGAGAAAGTTGACGAGTGTCAGAAATATGCCAAAAACTACATCGATACCATTAAG
Seq C2 exon
GACTATGAACTCCAATTAGTTGCCTACAAAGCTCAAGTCGAACCTCTGACTTCTCCTTTGAAGAAAACCAAGATGGAGTCTGCTTCTGATAACATCATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987-'46-45,'46-44,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTACTACAGGGAAAGCT
R:
AGTCAGAGGTTCGACTTGAGCT
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]