DreEX6040424 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19397698-19399787:-
Coord C1 exon
chr16:19399639-19399787
Coord A exon
chr16:19399422-19399549
Coord C2 exon
chr16:19397698-19397925
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTACCATATCTGTTTAATAGGGC
3' ss Score
8.23
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
AAATTTTATTGAGGACAGTTTGGGACCCAAGTATGTGCACATCAGTCATATGGAGTTTGAAAAATGTTTTGAGGAGTGCAGTCCAACAACACCAGTGTTCTTCATCCTTTCTCCTGGAGTCAATCCGGTCAAAGATGTAGAAAAACTTG
Seq A exon
GGCTGAAGCTTGGCTTTACCACAGACAGAGGGAACTTCCATAATGTGTCCTTAGGTCAAGGACAAGAAACTGTAGCTGAAATAGCGTTGGAGACCGCAGCTAAAAATGGACATTGGGTCATGCTGCAG
Seq C2 exon
AATATCCACCTGCTATCACAGTGGTTGAGTCGTCTGGAGGAGATGTTGGAGAACACGGCTAGCAATGCTCACTCAAACTACAGAGTGTTCATGAGTGGAGAACCAGCTCCCAATCCACATGAGCATCTAATCCCTCGCACCATCCTGGAGAACTCTCTCAAACTCACCACTGAACCCCCAACTGGCATGAACTCTACCTTACATGCTGCTCTGGACAACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'49-55,'49-53,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.224
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCAGTCCAACAACACCA
R:
GGGGGTTCAGTGGTGAGTTTG
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]