RnoEX6030098 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145812516-145817829:-
Coord C1 exon
chr6:145817681-145817829
Coord A exon
chr6:145816730-145816857
Coord C2 exon
chr6:145812516-145812743
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACCCCCAACTCTCCCACAGGCA
3' ss Score
9.09
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAATTTTGTAGAGGAGAAGCTAGGTACGAAGTACGTGGAGAGAACGAGATTGGATCTGGGTAAAGCATTTGGAGAAAGCAGCCCAGGCACCCCAGTGTTTTTCATCCTGTCCCCAGGCGTTGATGCCCTTAAAGACTTAGAGGTGCTTG
Seq A exon
GCAAAAGGCTGGGATTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCAGAAATGGCGCTGGAGAAAGCAGCCATTGGAGGACACTGGGTCTTCCTTCAG
Seq C2 exon
AATGTTCATCTGGTAGCCAAATGGCTGGGAACCTTGGAGAAACTCCTTGAAAAGTTCAGTCAAGGAAGCCACAGGGATTACAGGGTGTTCCTGAGTGCCGAGGCTGCACCTTCCCAACACGAGCCTGTCATCCCTCAAGGCCTCCTGGAAAATTCCATTAAGATCACCAACGAGCCCCCCACAGGAATGCTGGCCAACCTGCATGCTGCTCTATACAACTTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'94-97,'94-95,95-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACCCCAGTGTTTTTCA
R:
GGGGGCTCGTTGGTGATCTTA
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]