MmuEX0014959 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117911018-117915607:-
Coord C1 exon
chr12:117915459-117915607
Coord A exon
chr12:117914506-117914633
Coord C2 exon
chr12:117911018-117911245
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACCCCCAATTCTCCAACAGGCA
3' ss Score
8.49
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATTTCGTAGAAGAGAAACTAGGAGCAAAGTATGTGGAGAGGACTAGATTGGACCTGGGCAAAGCATTTGAAGAAAGCAGCCCGAGCACCCCGGTGTTCTTCATCCTGTCTCCAGGTGTGGATGCCCTTAAAGACTTAGAGGTGCTCG
Seq A exon
GCAAAAGGCTGGGGTTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCGGAAATGGCAATGGAGAAAGCTGCCGCTGGAGGACACTGGGTCATCCTTCAG
Seq C2 exon
AATGTTCATCTGGTAGCCAAATGGCTGGGAACTCTGGAGAAACTCCTTGAAAAATTCAGTCAAGGAAGCCACAGAGATTACAGGGTGTTCCTGAGTGCTGAGACTGTACCTTCCCAACATGAGCCCATAATCCCTCAAGGCCTCCTGGAAAATTCCATTAAGATCACTAACGAGCCCCCCACGGGAATGCTGGCCAACCTACATGCTGCTTTGTACAACTTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'98-95,'98-92,99-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTAGATTGGACCTGGGC
R:
CCAGGAGGCCTTGAGGGATTA
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types