GgaEX1002507 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:30567655-30568993:+
Coord C1 exon
chr2:30567655-30567798
Coord A exon
chr2:30568859-30568946
Coord C2 exon
chr2:30568949-30568993
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTCATTCATTTTCCCCCAATTA
3' ss Score
-0.29
5' ss Seq
GAGGAGGAC
5' ss Score
-7.43
Exon sequences
Seq C1 exon
GAATGTTGTGGATGCAGAGCATAGCTCAAGATATGTGGAAGGCAAAGGAATGGACTTAGTAAAGTCATACAAAGAAATCAGTCCAACCACTCCTTTGTTTTTCATTCCATCTCCAGGAGTGAACCCATTTGAAGACATGGAGAT
Seq A exon
TTATTTCTTTTACAGGCAAAAAGCTTCTACTATAAACTCTGGAAGATTTCATATCTCTTTAGAACAAAGTCAGAAGATGGTTATGGAG
Seq C2 exon
GGACTTGATAAGGCTGCCAAGTATGGCCACTGGCTTCTTCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906-'2-2,'2-1,3-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(17.3=100)
A:
PF0302810=Dynein_heavy=FE(10.5=100)
C2:
PF0302810=Dynein_heavy=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTTGTGGATGCAGAGCA
R:
TACTTGGCAGCCTTATCAAGTCC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]