GgaEX1002507 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTA2]
Coordinates
chr2:30670507-30674358:+
Coord C1 exon
chr2:30670507-30670654
Coord A exon
chr2:30671726-30671845
Coord C2 exon
chr2:30674128-30674358
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCAATTATTTCTTTTACAGGCA
3' ss Score
9.25
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAATGTTGTGGATGCAGAGCATAGCTCAAGATATGTGGAAGGCAAAGGAATGGACTTAGTAAAGTCATACAAAGAAATCAGTCCAACCACTCCTTTGTTTTTCATTCCATCTCCAGGAGTGAACCCATTTGAAGACATGGAGATCTAG
Seq A exon
GCAAAAAGCTTCTACTATAAACTCTGGAAGATTTCATATCTCTTTAGAACAAAGTCAGAAGATGGTTATGGAGGAGGACTTGATAAGGCTGCCAAGTATGGCCACTGGCTTCTTCTCCAA
Seq C2 exon
CAGAATATTCGTGTGGCAGCCAAGTGGCTAGGAACCTTGGAAAAACTCCTTGAGCAATACAGTGAAGAAAGCCACTCTGACTTCCATGTCTTCATTAGTACTGAACCAGCTCCAGGCCCAGAAGAGCACGTCGTTCTTCAAGGAATACTTGAAGACTGGATTACAATTACCAGAGGAGCTCCTACAAGGACGCTAGCTAATCTATGTGCTGCCCTCCACAGTTTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(17.3=100)
A:
PF0302810=Dynein_heavy=FE(5.1=100)
C2:
PF0302810=Dynein_heavy=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGGCAAAGGAATGGAC
R:
AAGAACGACGTGCTCTTCTGG
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]