DreEX6042863 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47843461-47847947:-
Coord C1 exon
chr16:47847834-47847947
Coord A exon
chr16:47845365-47845460
Coord C2 exon
chr16:47843461-47843660
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCAAATTTCTCATTTCATAGGAG
3' ss Score
7.58
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TTCTCTTTGGCCAGTTTATGTTCTTCCAGACGACCTCTAATGATGTGGTGGAGATCTTTGACGGGGCGTCCACCGAGTCTGCGCTCCTCTCCTCCACTTACGGCTCACACTCAG
Seq A exon
GAGAGCCGTTGCCGCTGAGCTCTGCCAATGAAATCACCATCAGGTTCAAAACAGAAGGACCCAACACAGCTAAAGGCTTTCATTTTGTGTACCAAG
Seq C2 exon
CTGTTCCGAGGACCAGTGCCTCTCAGTGCAGCTCTGTACCCGAGCCTCGCTACGGGAAGCGCATTGGGAATGACTTTGGATTGGGAACGGTTGTGCTTTTCGAGTGTAACCCAGGTTATACTCTCCATGGTGCCAGTGCCATCAGGTGTGAGGCAGTGCCCAACTCACTCGCCCAGTGGAACGGCACTGTGCCAGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(35.8=100)
A:
PF0043115=CUB=PD(28.3=90.9)
C2:
PF0008415=Sushi=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAGATCTTTGACGGG
R:
ACACTCGAAAAGCACAACCGT
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]