GgaEX1017860 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132919820-132921748:-
Coord C1 exon
chr2:132921635-132921748
Coord A exon
chr2:132920885-132920980
Coord C2 exon
chr2:132919820-132920023
Length
96 bp
Sequences
Splice sites
3' ss Seq
TATTTGCTTTGTTTGAGTAGGTG
3' ss Score
4.85
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGGTTTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCATGATGTGGTTGAAGTATACGATGGCCCAACTCTGCAGTCATCTTTGTTATCTTCTCTCTCAGGATCTCATTCAG
Seq A exon
GTGAATCCCTTCCGTTGAGCTCAGGTAACCAGATCACAGTTAGATTTACTTCAGTTGGACCAATAACAGCTAAAGGATTTCATTTTGTTTATCAAG
Seq C2 exon
CTGTTCCAAGAACAAGTGCAACACAGTGCAGCTCTGTGCCTGAACCAAGATTTGGAAAAAGAATTGGAAATGAATTTGCAGTTGGATCCTTGGTTCTGTTTGAATGCAATCCAGGATATATCCTCCATGGGTCAACAGGAATTAGATGTGATACAGTACCAAATGCATTGGCACAGTGGAATGATTCACTCCCTACATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'37-42,'37-41,38-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(35.8=100)
A:
PF0043115=CUB=PD(28.3=90.9)
C2:
PF0008415=Sushi=WD(100=85.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAAGTATACGATGGCCCA
R:
ACAGAACCAAGGATCCAACTGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]