HsaEX6081994 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112406524-112409032:-
Coord C1 exon
chr8:112408919-112409032
Coord A exon
chr8:112408318-112408413
Coord C2 exon
chr8:112406524-112406727
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTGTTGAGTAGGAG
3' ss Score
4.92
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTATGATGGGCCAACTCAGCAATCTTCTCTGTTATCTTCCCTCTCAGGATCCCATTCAG
Seq A exon
GAGAATCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTTACTTCAGTTGGACCAATAACAGCTAAGGGATTTCACTTTGTTTACCAAG
Seq C2 exon
CTGTTCCTAGAACAAGTTCTACACAATGCAGTTCTGTGCCTGAACCAAGATTCGGAAGAAGAATTGGCAATGAATTTGCAGTCGGTTCATCGGTTCTTTTTGATTGTAATCCAGGATATATTCTCCATGGATCCATAGCAATTAGGTGTGAAACAGTGCCCAATTCTTTGGCCCAGTGGAATGATTCCTTACCTACTTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'66-69,'66-68,67-69
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(35.8=100)
A:
PF0043115=CUB=PD(28.3=90.9)
C2:
PF0043115=CUB=PD(9.5=5.8),PF0008415=Sushi=WD(100=94.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGATGTTGTTGAGGTGT
R:
AAGAACCGATGAACCGACTGC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains