HsaEX6081994 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113418753-113484936:-
Coord C1 exon
chr8:113484820-113484936
Coord A exon
chr8:113420547-113420642
Coord C2 exon
chr8:113418753-113418956
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTGTTGAGTAGGAG
3' ss Score
4.92
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGCCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCAAAGGAGTTTG
Seq A exon
GAGAATCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTTACTTCAGTTGGACCAATAACAGCTAAGGGATTTCACTTTGTTTACCAAG
Seq C2 exon
CTGTTCCTAGAACAAGTTCTACACAATGCAGTTCTGTGCCTGAACCAAGATTCGGAAGAAGAATTGGCAATGAATTTGCAGTCGGTTCATCGGTTCTTTTTGATTGTAATCCAGGATATATTCTCCATGGATCCATAGCAATTAGGTGTGAAACAGTGCCCAATTCTTTGGCCCAGTGGAATGATTCCTTACCTACTTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'39-41,'39-40,41-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
PF0043115=CUB=PD(28.3=90.9)
C2:
PF0043115=CUB=PD(9.5=5.8),PF0008415=Sushi=WD(100=94.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGAAGTCGTTCAACA
R:
CCGAATCTTGGTTCAGGCACA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)