MmuEX0012912 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47753715-47756081:-
Coord C1 exon
chr15:47755968-47756081
Coord A exon
chr15:47755386-47755481
Coord C2 exon
chr15:47753715-47753918
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTGTTGAGTAGGAG
3' ss Score
4.92
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
Seq A exon
GAGAGTCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTCACTTCAGTTGGACCCATAACAGCTAAGGGATTTCACTTTGTTTATCAAG
Seq C2 exon
CCGTTCCTAGAACAAGCTCTACACAGTGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTGGTTCATTGGTCCTTTTTGAGTGTAATCCAGGATACATTCTCCATGGCTCCAGAGCCATTAGGTGTGAAACAGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTTACCTACATGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'81-49,'81-48,82-49
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(35.8=100)
A:
PF0043115=CUB=PD(28.3=90.9)
C2:
PF0043115=CUB=PD(11.9=7.2),PF0008415=Sushi=WD(100=94.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGATGTTGTTGAGGTGT
R:
AGGACCAATGAACCAACTGCA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types