DreEX6042866 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47787687-47794569:-
Coord C1 exon
chr16:47794360-47794569
Coord A exon
chr16:47790809-47790997
Coord C2 exon
chr16:47787687-47787864
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCGACCATCCAGCCT
3' ss Score
4.45
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGATTCACCTGCAGTTCCTTAACTTCTCCACGGAGTCTGTACACGATTACCTTGAGGTCCGGAGCGGGACGCTGGACTCAGGATCAGTGATCGATAGGTTCAGTGGACCTGTTGTTCCCGAATCTTTCTTCAGCACGACCCACGAGACCAGCTTCTTCTTTCACAGCGACTACTCCCAGAACAAACCCGGCTTCCACATCACCTACGAGG
Seq A exon
CCTATGAACTGCAGAGGTGTCCGGATCCACGGCCCTTTCGCAATGGTGTGGTGATTGGCAGTGATTTTGGAGTGGGCATGACCATCTCCTTCCAGTGTCTGCCAGGATACACGCTGCTGGGTGAATCGTCGCTCACCTGTCTGCATGGTGTCAGCCGAAACTGGAACCATCCTGTGCCTCGCTGTGAAG
Seq C2 exon
CACTTTGCGGTGGTAATATCACAGTCCTCAATGGGACCATCTACTCTCCGGGCCACCCGGCTGACTACCCCAATCTTAAAGACTGCATATGGAGCATTCGAGTACCTCCAGGCAACGGCATCCACATCAACTTTACCGTTCTCAACACCGAGCCCATCTACGACTACATCACCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(65.1=97.2)
A:
PF0008415=Sushi=WD(100=87.5)
C2:
PF0043115=CUB=PU(53.3=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTTCAGCACGACCCAC
R:
TAGTCGTAGATGGGCTCGGTG
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]