MmuEX6053522 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47696647-47704323:-
Coord C1 exon
chr15:47704114-47704323
Coord A exon
chr15:47698071-47698259
Coord C2 exon
chr15:47696647-47696824
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTTTTTTCTTCCAGCCT
3' ss Score
9.3
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGTACATCTCCAGTTTGTAAATTTTTCTACAGAAACCATACATGATTACCTGGAAGTACGGAGTGGATCCTCCGAAATTAGCACTGTTATTGGACGGCTTAGTGGTCCGCAAATACCATCTTCTCTGTTTAGCACAACTCATGAAACCAGCTTGTATTTTCACAGTGACTATTCTCAGAACAAACAGGGATTTCATATTGTGTATCAAG
Seq A exon
CCTACCAGTTGCAAAGCTGTCCTGATCCTCGCCCATTTCGAAATGGGTTTGTAATTGGAAATGATTTTACTGTGGGTCAAACCATTTCATTCGAATGTTTCCCAGGATACACATTAATTGGCAACTCAGCTCTCACATGTCTTCATGGAGTCAGCCGGAATTGGAACCATCCGCTGCCAAGGTGTGAAG
Seq C2 exon
CTCTTTGTGGCGGGAATATAACTGCAATGAATGGTACCATTTATTCTCCTGGCTATCCTGATGAATATCCAAACTTCCAAGACTGCTTTTGGCTCGTAAGAGTTCCCCCTGGGAATGGGATCTACATCAATTTTACTGTTCTTCAAACAGAACCCATCTATGACTTCATTACTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'91-59,'91-58,92-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(64.2=95.8)
A:
PF0008415=Sushi=WD(100=87.5)
C2:
PF0043115=CUB=PU(54.3=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGTTATTGGACGGCTT
R:
TGTAGATCCCATTCCCAGGGG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types