HsaEX6082002 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113348881-113353915:-
Coord C1 exon
chr8:113353706-113353915
Coord A exon
chr8:113349772-113349960
Coord C2 exon
chr8:113348881-113349058
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCTCTTTCCAGCCT
3' ss Score
10.16
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTGTACATCTCCAGTTTGTAAATTTTTCTACAGAAACCATACATGATTATTTGGAAGTACGAAGTGGATCCTCAGAAACTAGTACTGTTATTGGCCGGCTTAGTGGTCCTCAAATACCATCTTCCTTATTCAGCACCACCCATGAAACCAGCTTATATTTTCACAGTGACTATTCACAAAACAAACAAGGGTTTCATATTGTATACCAAG
Seq A exon
CCTATCAGTTGCAAAGCTGTCCTGATCCACGCCCGTTTCGAAATGGTTTTGTAATTGGTAATGATTTTACTGTGGGTCAAACCATTTCATTTGAATGTTTCCCAGGATACACATTAATTGGAAATTCAGCTCTCACATGCCTTCACGGAGTCAGTCGTAATTGGAATCATCCACTTCCAAGGTGTGAAG
Seq C2 exon
CTCTTTGTGGTGGGAATATAACTGCAATGAATGGCACCATTTATTCTCCTGGGTATCCTGATGAATATCCAAACTTTCAAGATTGTTTTTGGCTTGTAAGAGTACCCCCTGGGAATGGCATCTACATCAATTTTACTGTCCTTCAAACAGAACCAATATATGATTTCATTACTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'49-51,'49-49,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(64.2=95.8)
A:
PF0008415=Sushi=WD(100=87.5)
C2:
PF0043115=CUB=PU(54.3=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATTGGCCGGCTTAGTGGT
R:
CCATTCCCAGGGGGTACTCTT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)