GgaEX1017861 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:132889912-132898103:-
Coord C1 exon
chr2:132897894-132898103
Coord A exon
chr2:132893975-132894163
Coord C2 exon
chr2:132889912-132890089
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATTATTGTTATCTATTTTAGCAT
3' ss Score
8.45
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTCCATTTACAATTTGTAAATTTCTCAACGGAGACCATACATGATTACTTAGAAGTCAGAAGTGGATCTACAGAAACTAGTACTGTTATTGGGAGACTAAGTGGCCCTCAGCTACCAGCCTCTCTATTCAGCACAACTCATGAAACTAGCTTATATTTTCACAGTGATTACTCACAGAACAAGCAAGGATTTCATATTGTATATCAAG
Seq A exon
CATATCAACTACAAAGCTGTCCTGACCCTCGACCATTTCGGAATGGTTTTGTTATTGGGACTGATTTTACTGTGGGACAAACCATTTCATTTGAATGTTTTCCTGGCTACACATTAATTGGAATTTCTGCCCTGACTTGTCTTCATGGTGTTAGTCGTAACTGGAATCATCCTCTGCCCAGATGTGAAG
Seq C2 exon
CTCTCTGTGGAGGAAATATAACTGCAATGAATGGCACCATATATTCTCCAGGATACCCTGATGAGTATCCTAACTTTCAAGACTGCTTCTGGCTTGTAAGAGTACCACCTGGGAATGGAATCTACATCAATTTCACAGTTCTCCAGACAGAGCCAATATATGATTTCATAACTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'46-51,'46-50,47-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(64.2=95.8)
A:
PF0008415=Sushi=WD(100=87.5)
C2:
PF0043115=CUB=PU(54.3=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCTACCAGCCTCTCTA
R:
TGGCTCTGTCTGGAGAACTGT
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]