RnoEX0003318 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86799114-86803460:-
Coord C1 exon
chr7:86803251-86803460
Coord A exon
chr7:86799963-86800151
Coord C2 exon
chr7:86799114-86799291
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTTTTTTCTTCCAGCAT
3' ss Score
9.83
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GTGTACATCTCCAGTTTGTAAATTTTTCTACAGAAACCATACATGATTACTTGGAAGTAAGGAGTGGATCTTCAGAACTTAGTACTGTCATTGGACGGCTTAGTGGTCCTCAAATACCATCTTCCCTGTTTAGCACAACCCATGAAACCAGCTTATATTTTCACAGCGATTATTCTCAGAACAAACAGGGATTTCATATTGTGTATCAAG
Seq A exon
CATATCAGTTGCAAAGCTGTCCTGATCCTCGCCCATTTCGAAATGGGTTTGTAATTGGAAATGATTTTACAGTGGGCCAAACCATTTCATTTGAATGTTTCCCAGGATACACATTAATTGGCAACTCAGCTCTCACATGTCTTCACGGAGTTAGTCGGAATTGGAACCATCCACTGCCAAGGTGTGAAG
Seq C2 exon
CTCTTTGTGGCGGGAATATAACTGCAATGAATGGTACCATTTATTCTCCTGGCTATCCTGATGAGTATCCAAACTTCCAAGACTGCTTCTGGCTTGTTAGAGTACCCCCTGGGAATGGCATCTACATCAATTTTACTGTTCTTCAAACAGAACCCATCTATGACTTCATTACTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'45-55,'45-54,48-55
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGACGGCTTAGTGGTCC
R:
TGTAGATGCCATTCCCAGGGG
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]