DreEX6042878 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47723118-47729200:-
Coord C1 exon
chr16:47729027-47729200
Coord A exon
chr16:47727329-47727502
Coord C2 exon
chr16:47723118-47723303
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTTTCTCCTCAGCCA
3' ss Score
8.72
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
CCGGACACTGTGGCATTCCTGAACGGATCGTGAACGGTCAAGTGATCGGGGAAAACTTTGGCTACAGGGATACAGTGGTCTACCAGTGCAATCCGGGTTTCCGGCTCATCGGTTCCTCCGTGCGGATCTGCCAACAGGATCACAACTGGTCCGGGCAGCTGCCATCCTGCGTGT
Seq A exon
CCATCAGCTGTGGTCATCCGGGCAGCCCGATCTACGGCCGTACGGTTGGTGACGGCTTCAACCTAAATGACGTGGTGACCTTCTTCTGTAATAAGGGCTACATTCTGGAAGGGCCGTCTGAAGCGCAGTGTCAGTCCGACCGGCAGTGGAGCCAGCACCCACCCACATGCAGAG
Seq C2 exon
TCGTCAACTGCACTGATCCCGGAATACCAGCCAACTCAATCAGGAAGAGCAAAATTGAGTACGGAAACTTCACTTTCGGGACCGTGGTGTCCTATGACTGCAATCCAGGCTATTACCTCTTCGGGTCATCGGTTCTGACCTGCCAGCCGGTGGGCTACTGGGACAAGCCATTACCAGAATGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'56-55,'56-54,57-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTGGCATTCCTGAACG
R:
CACGGTCCCGAAAGTGAAGTT
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]