MmuEX6053534 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47644142-47650272:-
Coord C1 exon
chr15:47650099-47650272
Coord A exon
chr15:47645400-47645573
Coord C2 exon
chr15:47644142-47644327
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCACCAATGATTTAGCTG
3' ss Score
4.47
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CGGGTCACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTATATCAGTGTAACCCTGGCTTTCGTCTGATTGGTTCTTCTGTGAGGATATGTCAGCAGGATCACAACTGGTCTGGTCAGCTCCCATCCTGTGTGC
Seq A exon
CTGTTAGCTGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACAAGTGGAAATGGGTTCAACTTTAATGATGTGGTAACATTCTCTTGCAATATTGGGTATCTTATGCAAGGACCAACAAAGGCACAGTGTCAGGCTAACAGGCAGTGGAGCCATCCTCCACCAGTGTGCAAAG
Seq C2 exon
TGGTGAACTGTTCTGATCCTGGAATTCCAGCCAATTCCAAAAGAGAAAGCAAAATAGAACATGGAAATTTTACCTATGGCACTGTGGTATTCTATGACTGCAACCCAGGCTATTTTTTATTTGGCTCTTCAGTTTTGATATGTCAGCCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'106-73,'106-72,108-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCTTTCGTCTGATTGG
R:
TGTCCCATTGTCCATTTGGCT
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types