GgaEX6022139 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139023406-139027568:-
Coord C1 exon
chr2:139027395-139027568
Coord A exon
chr2:139025703-139025876
Coord C2 exon
chr2:139023406-139023591
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTGCTATGCTAGCTG
3' ss Score
5.37
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CTGGTCACTGTGGTATTCCAGATCTTATAGTCAATGGTCAAGTAATTGGAGAAAATTATGGGTATAGAGACACAGTTGTATACCAATGCAGTCCCGGTTTTCGGTTGATTGGTTCTTCTGTAAGGATCTGTCAACAGGATCACAACTGGTCTGGTCAGCTTCCATCTTGTGTGC
Seq A exon
CTGTTAGCTGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACAAGTGGAAATGGTTTCAACTTCAATGACGTTGTGACATTCTCATGTAATACTGGCTATGTTATGCAAGGACCAAGCAAAGCACACTGTCAGGCTAATAGACAATGGAGCCACCCACCTCCAATATGCAAAG
Seq C2 exon
TGGTGAATTGTTCCGATCCTGGAATTCCTGCAAATTCCATACGAGAGAGTAAAATAGAACATGGAAATTTCACATATGGCACAGTGGTATTTTATGACTGTAATCCTGGTTATTTTTTATTTGGCTCTTCAGTTTTAGTTTGTCAACCAAATGGTCATTGGGACAAACCTCTGCCTGAATGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'54-56,'54-55,55-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTTCGGTTGATTGGTTCT
R:
AGGCAGAGGTTTGTCCCAATG
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]