HsaEX6082014 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112291510-112296006:-
Coord C1 exon
chr8:112295833-112296006
Coord A exon
chr8:112292537-112292710
Coord C2 exon
chr8:112291510-112291695
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCACATCTTATTAGCTG
3' ss Score
3.88
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGGGTCATTGTGGAATTCCAGAACTGATTGTGAATGGTCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTATATCAATGTAATCCTGGTTTTCGATTGATTGGTTCTTCAGTGAGGATATGTCAACAGGATCACAATTGGTCTGGTCAGCTCCCATCCTGTGTGC
Seq A exon
CTGTTAGCTGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACAAGTGGAAATGGGTTCAACTTTAATGATGTGGTAACATTCTCATGCAATATTGGGTATCTTATGCAAGGGCCAACAAAGGCACAGTGCCAGGCCAACAGACAGTGGAGCCATCCTCCACCTATGTGCAAAG
Seq C2 exon
TGGTCAACTGTTCTGATCCTGGAATTCCAGCCAATTCTAAAAGAGAAAGTAAAATAGAACATGGAAATTTTACTTACGGCACTGTGGTATTCTATGACTGCAATCCTGGATATTTTTTATTTGGATCTTCAGTTTTGATATGTCAACCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'94-94,'94-93,96-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTTTTCGATTGATTGGT
R:
TCCCATTGTCCATTTGGTTGACA
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains