RnoEX0003321 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86741218-86749601:-
Coord C1 exon
chr7:86749428-86749601
Coord A exon
chr7:86744974-86745147
Coord C2 exon
chr7:86741218-86741403
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCCAATGATTTAGCTG
3' ss Score
4.49
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CGGGTCACTGTGGAATTCCAGATCTCATTGTAAATGGTCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTGTATCAGTGTAACCCTGGCTTTCGTCTGATTGGTTCTTCTGTGAGGATATGTCAGCAGGATCACAATTGGTCTGGTCAGCTCCCATCCTGTGTGC
Seq A exon
CTGTTAGCTGTGGTCACCCGGGCAGTCCAATTTATGGAAGAACAAGTGGAAATGGGTTCAACTTTAATGATGTGGTAACATTCTCTTGCAACATTGGGTATCTTATGCAAGGGCCAACAAAGGCACAGTGCCAGGCCAACAGGCAGTGGAGCCATCCTCCACCTGTGTGCAAAG
Seq C2 exon
TGGTGAACTGTTCTGATCCTGGAATTCCAGCCAATTCCAAAAGAGAAAGCAAAATAGAACATGGGAATTTTACCTATGGTACTGTGGTATTCTATGACTGTAACCCAGGATATTTTTTATTTGGGTCTTCAGTTTTGATATGTCAGCCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'61-68,'61-67,63-68
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCTTTCGTCTGATTGG
R:
TGTCCCATTGTCCATTTGGCT
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]