DreEX6042930 @ danRer10
Exon Skipping
Gene
ENSDARG00000098654 | RFTN1 (2 of 2)
Description
raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:HGNC:30278]
Coordinates
chr16:48870137-48922533:-
Coord C1 exon
chr16:48922327-48922533
Coord A exon
chr16:48898782-48898897
Coord C2 exon
chr16:48870137-48870240
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATATCTTTTTTTCTTTGCAGATG
3' ss Score
12.57
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCCGAGCTCTTCGGTCTGTTTAATTACCCGGGTCGGCGTTCAGCTCAGCTCAAGTACTACACTGTTAAAGTTCCTCTTCGAGTGCAAACGCAGAGCGACGGCATCTGGAGCCTGGAGGCAAACTGGCTGGATCACATGACCCAACACTTCAACAACGGAGCCTCGCTTGTGGACGGATACTTCCAGATCAACAACCACAACAATG
Seq A exon
ATGTTCTTGTGAAGACCGTGGACAGCGTGTTTGTGTTTCAGGAGGGTGTCGAGGGCGACACCAACTCAGCTGCTGCATATGACGCTATAGTGGTGGAGCAGTGGACAATCATTGAC
Seq C2 exon
GGTTTGGAGGTGAAGACAGACTATATTCCACTGCTGCAGTCACTGGCTTCATTCGGATGGAGACTCACTTGTGTTCTGCCAACACCCATCACTAAAACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098654-'3-7,'3-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(15.9=100)
A:
PF152501=Raftlin=FE(8.8=100)
C2:
PF152501=Raftlin=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTAATTACCCGGGTCGGC
R:
CGAATGAAGCCAGTGACTGCA
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]