HsaEX0053210 @ hg19
Exon Skipping
Gene
ENSG00000131378 | RFTN1
Description
raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:30278]
Coordinates
chr3:16368280-16411786:-
Coord C1 exon
chr3:16411583-16411786
Coord A exon
chr3:16399439-16399554
Coord C2 exon
chr3:16368280-16368383
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTCTTTTTCCACAGATT
3' ss Score
13.05
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAATGGAGATCTTCACCCTTTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTACCCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACCACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCTTGGAATAGTGAATG
Seq A exon
ATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATACAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGGAA
Seq C2 exon
GGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCCGTCGTCAAGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131378_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(14.1=100)
A:
PF152501=Raftlin=FE(7.9=100),PF137831=DUF4177=PU(5.6=7.7)
C2:
PF152501=Raftlin=FE(7.0=100),PF137831=DUF4177=FE(63.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCCGGCAATACTACCC
R:
GGGAGTTGGTAGCACACAGGT
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)