MmuEX0039528 @ mm9
Exon Skipping
Gene
ENSMUSG00000039316 | Rftn1
Description
raftlin lipid raft linker 1 [Source:MGI Symbol;Acc:MGI:1923688]
Coordinates
chr17:50143579-50226001:-
Coord C1 exon
chr17:50225893-50226001
Coord A exon
chr17:50176266-50176381
Coord C2 exon
chr17:50143579-50143682
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTCTTTCCACAGATT
3' ss Score
12.4
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCTCAGAAGGCTGAGCTTCACGACGAAGGCTACACCCTGGAATTGGATTACTGCTCCTCCTTAGAACACCTGGCCGACCAGAAGCTCATCCCAGAGTTCATTAAGAAG
Seq A exon
ATTCCTTCTATGGCCTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAACAGAACCACACAGGGCTATGACGCTATTGTTGTGGAACAATGGACAGTCCTAGAA
Seq C2 exon
GGTACAGAGGTACAGACCGACTACATGCCCCTGCTGAACTCGCTGGCGGCCTACGGATGGCAGCTCACCTGTGTGCTGCCAACGCCTATACTCAAGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039316_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(7.4=100)
A:
PF152501=Raftlin=FE(18.4=100),PF137831=DUF4177=PU(13.6=20.5)
C2:
PF152501=Raftlin=FE(16.4=100),PF137831=DUF4177=FE(57.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGGCTGAGCTTCACGA
R:
CTGGTAGTCTTGAGTATAGGCGT
Band lengths:
210-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: